PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g17880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 285aa    MW: 31920.6 Da    PI: 8.627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g17880genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09655154
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               r++ +  rE+ RR+++N+ f eL  +l ++     +K++Ka+iL+ +v+ +k+L
  Tp3g17880  6 RKTQKAGREKLRREKLNEHFVELGNVLDPD----RPKNDKATILTDTVQLLKDL 55
               5677788*******************9997....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-13572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.932555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-7655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-7659No hitNo description
SMARTSM003531.8E-61161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDVSARKTQK AGREKLRREK LNEHFVELGN VLDPDRPKND KATILTDTVQ LLKDLTSEVN  60
KLKSEYTSLT DESRELTQEK NDLREEKTSL KSDIENLNLQ YQQRLRSMSP WGAAMDHTVM  120
MAPPPSFPYP MPMAMPPGSI PMHPSMPSYT YFGNQNPSMM PAPCPTYMPY MPPNTVVEQQ  180
SVHIPQNPGN RSRETRTKVS RESRSEKAED SNDVATQLEL KTPGSTSDKD TSQRPEKTKR  240
SKRNSSNNNS IEESSHSSKC SSSPSVRDNS SSSSVAGGQK PDDAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3175070.0AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBankAY0651070.0AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBankAY0817030.0AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188620.11e-172transcription factor bHLH121
SwissprotQ9LT231e-173BH121_ARATH; Transcription factor bHLH121
TrEMBLB9DHF51e-171B9DHF5_ARATH; AT3G19860 protein
TrEMBLV4NN551e-171V4NN55_EUTSA; Uncharacterized protein
STRINGAT3G19860.21e-171(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-154bHLH family protein